getLRR.mm: getLRR.mm

In mmariani123/MethylMasteR: What the Package Does (One Line, Title Case)

getLRR.mm

Description

MethylMaster version of Epicopy getLRR function

Usage

getLRR.mm(
  rgSet = rgset,
  Normals = Normals,
  sampNames = sampNames,
  QN = FALSE,
  Ref = "median",
  mode.bw = 0.1,
  mode.method = "naive",
  normal.cnv = TRUE,
  mean.center = TRUE,
  filter.autosomal.probes = FALSE,
  autosomal = NULL,
  filterProbes = FALSE,
  keep_fnobj = FALSE,
  ...
)

Arguments

rgSet	The rgSet parameter
Normals	The Normals parameter
sampNames	The sampNames parameter
QN	The QN parameter
Ref	The Ref parameter
mode.bw	The mode.bw parameter
mode.method	The mode.method parameter
normal.cnv	The normal.cnv parameter
mean.center	The mean.center parameter
filter.autosomal.probes	The filter.autosomal.probes parameter
autosomal	The autosomal parameter
filterProbes	The filterProbes parameter
...	Additional parameter passed to getLRR.mm
import	EpicopyData

Value

Return final LRR values

mmariani123/MethylMasteR documentation built on June 22, 2022, 3:06 p.m.