methyl_master_formatting_custom: methyl_master_formatting_custom

In mmariani123/MethylMasteR: What the Package Does (One Line, Title Case)

methyl_master_formatting_custom

Description

Formatting the results of the custom functionality to prepare for comparison and output

Usage

methyl_master_formatting_custom(
  custom.form.seg = NULL,
  custom.form.output.dir = getwd(),
  custom.form.sample.sheet.path = NULL,
  custom.form.comparison = NULL,
  custom.form.save.seg = FALSE,
  custom.form.thresholds = NULL,
  ...
)

Arguments

custom.form.seg	The input sesame segmentation list for formatting
custom.form.output.dir	The output dir for sesame formatting
custom.form.sample.sheet.path	The path to the MethylMaster sample sheet
custom.form.comparison	The MethylMaster comparison vector used in the custom routine analysis
custom.form.save.seg	Whether or not to save the formatted seg output
custom.form.thresholds	The thresholds used to determine the CNV state, if NULL, the equation seg.state <- round(2^seg.means * 2) is used
...	additional parameters to pass to methyl_master_formatting_sesame

Value

Formatted seg list object for visualizing etc.

mmariani123/MethylMasteR documentation built on June 22, 2022, 3:06 p.m.