champ.EpiMod: champ.EpiMod

In mmariani123/MethylMasteR: What the Package Does (One Line, Title Case)

champ.EpiMod

Description

MethylMaster version of the champ.EpiMod() function Note: BiocManager::install("FEM") see https://rdrr.io/github/gaberosser/ChAMP/src/R/champ.EpiMod.R

Usage

champ.EpiMod(
  beta = myNorm,
  pheno = myLoad$pd$Sample_Group,
  nseeds = 100,
  gamma = 0.5,
  nMC = 1000,
  sizeR.v = c(1, 100),
  minsizeOUT = 10,
  resultsDir = "./CHAMP_EpiMod/",
  PDFplot = TRUE,
  arraytype = "450K"
)

Arguments

beta	The beta parameter
pheno	The pheno parameter
nseeds	The nseeds parameter
gamma	The gamma parameter
nMC	The nMC parameter
sizeR.v	The sizeR.v parameter
minsizeOUT	The minisizeOUT parameter
resultsDir	The resultsDir parameter
PDFplot	The PDFplot parameter
arraytype	The arraytype parameter

Value

A ChAMP EpiMod object

mmariani123/MethylMasteR documentation built on June 22, 2022, 3:06 p.m.