methyl_master_formatting_epicopy: methyl_master_formatting_epicopy

In mmariani123/MethylMasteR: What the Package Does (One Line, Title Case)

methyl_master_formatting_epicopy

Description

Formatting the Epicopy output into MethylMaster seg object for downstream analyses

Usage

methyl_master_formatting_epicopy(
  epi.form.seg = NULL,
  epi.form.output.dir = getwd(),
  epi.form.save.seg = FALSE,
  epi.form.comparison = NULL,
  epi.form.thresholds = NULL
)

Arguments

epi.form.seg	The input Epicopy seg results
epi.form.output.dir	The output dir for the formatted seg object
epi.form.save.seg	Whether to save the formatted Epicopy seg results
epi.form.comparison	The comparison vector used earlier in the anlysis
epi.form.thresholds	The thresholds used to determine the CNV state, if NULL, the equation seg.state <- round(2^seg.means * 2) is used

Value

Formatted epicopy result as a MethylMaster seg object for downstream analysis

mmariani123/MethylMasteR documentation built on June 22, 2022, 3:06 p.m.