API for nbenn/singleCellFeatures
Analyze single cell features stored in an openBIS instance
| Global functions | |
|---|---|
| .onAttach | Source code |
| .onLoad | Source code |
| ImageData | Man page Source code |
| MatData | Man page Source code |
| PlateAggregate | Man page Source code |
| PlateData | Man page Source code |
| PlateLocation | Man page Source code |
| PlateMetadata | Man page Source code |
| WellData | Man page Source code |
| WellLocation | Man page Source code |
| WellMetadata | Man page Source code |
| analyzeSeparation | Man page Source code |
| augmentAggregate | Man page Source code |
| augmentAggregate.PlateData | Source code |
| augmentAggregate.WellData | Source code |
| augmentAggregate.default | Source code |
| augmentBscore | Man page Source code |
| augmentBscore.PlateData | Source code |
| augmentBscore.default | Source code |
| augmentCordinateFeatures | Man page Source code |
| augmentCordinateFeatures.ImageData | Source code |
| augmentCordinateFeatures.PlateData | Source code |
| augmentCordinateFeatures.WellData | Source code |
| augmentCordinateFeatures.default | Source code |
| augmentImageLocation | Man page Source code |
| augmentImageLocation.ImageData | Source code |
| augmentImageLocation.PlateData | Source code |
| augmentImageLocation.WellData | Source code |
| augmentImageLocation.default | Source code |
| augmentMars | Man page Source code |
| augmentMars.PlateData | Source code |
| augmentMars.default | Source code |
| buildPrototypeHelper | Source code |
| checkCompletenessFeature | Man page Source code |
| checkCompletenessFeature.Data | Source code |
| checkCompletenessFeature.default | Source code |
| checkCompletenessImage | Man page Source code |
| checkCompletenessImage.PlateData | Source code |
| checkCompletenessImage.WellData | Source code |
| checkCompletenessImage.default | Source code |
| checkCompletenessWell | Man page Source code |
| checkCompletenessWell.PlateData | Source code |
| checkCompletenessWell.default | Source code |
| checkConsistency | Man page Source code |
| checkConsistency.PlateData | Source code |
| checkConsistency.WellData | Source code |
| checkConsistency.default | Source code |
| cleanData | Man page Source code |
| cleanData.ImageData | Source code |
| cleanData.PlateData | Source code |
| cleanData.WellData | Source code |
| cleanData.default | Source code |
| compareModeltoTruth | Man page Source code |
| configGet | Man page Source code |
| configInit | Man page Source code |
| configPathGet | Man page Source code |
| configPathSet | Man page Source code |
| configSet | Man page Source code |
| convertToPlateLocation | Man page Source code |
| convertToPlateLocation.Data | Source code |
| convertToPlateLocation.DataLocation | Source code |
| convertToPlateLocation.PlateAggregate | Source code |
| convertToPlateLocation.default | Source code |
| convertToWellLocation | Man page Source code |
| convertToWellLocation.WellData | Source code |
| convertToWellLocation.default | Source code |
| deleteAllMetadataCaches | Man page Source code |
| deleteAllWellCaches | Man page Source code |
| dowloadFeatureHelper | Source code |
| extractCells | Man page Source code |
| extractCells.ImageData | Source code |
| extractCells.PlateData | Source code |
| extractCells.WellData | Source code |
| extractCells.default | Source code |
| extractFeatures | Man page Source code |
| extractFeatures.ImageData | Source code |
| extractFeatures.MatData | Source code |
| extractFeatures.PlateData | Source code |
| extractFeatures.WellData | Source code |
| extractFeatures.default | Source code |
| extractFeaturesMatchingHelper | Source code |
| extractImages | Man page Source code |
| extractImages.PlateData | Source code |
| extractImages.WellData | Source code |
| extractImages.default | Source code |
| extractWells | Man page Source code |
| extractWells.PlateData | Source code |
| extractWells.default | Source code |
| findFeatureHelper | Source code |
| findPlates | Man page Source code |
| findWells | Man page Source code |
| getAllLocalPlates | Man page Source code |
| getBarcode | Man page Source code |
| getBarcode.DataLocation | Source code |
| getBarcode.ImageData | Source code |
| getBarcode.MatData | Source code |
| getBarcode.PlateData | Source code |
| getBarcode.WellData | Source code |
| getBarcode.default | Source code |
| getCacheFilenameData | Man page Source code |
| getCacheFilenameData.PlateLocation | Source code |
| getCacheFilenameData.WellLocation | Source code |
| getCacheFilenameData.default | Source code |
| getCacheFilenameMeta | Man page Source code |
| getCacheFilenameMeta.DataLocation | Source code |
| getCacheFilenameMeta.default | Source code |
| getFeatureLocationInStructure | Source code |
| getFeatureNames | Man page Source code |
| getFeatureNames.ImageData | Source code |
| getFeatureNames.MatData | Source code |
| getFeatureNames.PlateData | Source code |
| getFeatureNames.WellData | Source code |
| getFeatureNames.default | Source code |
| getImageStructure | Source code |
| getLocalPath | Man page Source code |
| getLocalPath.DataLocation | Source code |
| getLocalPath.default | Source code |
| getNoImgPerWell | Man page Source code |
| getNoImgPerWell.ImageData | Source code |
| getNoImgPerWell.MatData | Source code |
| getNoImgPerWell.PlateData | Source code |
| getNoImgPerWell.WellData | Source code |
| getNoImgPerWell.default | Source code |
| getNumCores | Man page Source code |
| getOpenBisPath | Man page Source code |
| getOpenBisPath.DataLocation | Source code |
| getOpenBisPath.default | Source code |
| getPathogen | Man page Source code |
| getPathogen.DataLocation | Source code |
| getPathogen.WellData | Source code |
| getPathogen.WellMetadata | Source code |
| getPathogen.default | Source code |
| getSingleCellData | Man page Source code |
| getWellIndex1D | Man page Source code |
| getWellIndex2D | Man page Source code |
| getWellName | Man page Source code |
| getWellName.ImageData | Source code |
| getWellName.WellData | Source code |
| getWellName.WellLocation | Source code |
| getWellName.default | Source code |
| getWells | Source code |
| glmBootstrapStability | Man page Source code |
| makeFeatureCompatible | Man page Source code |
| makeRankFull | Man page Source code |
| meltData | Man page Source code |
| meltData.ImageData | Source code |
| meltData.PlateData | Source code |
| meltData.WellData | Source code |
| meltData.default | Source code |
| moveFeatures | Man page Source code |
| normalizeData | Man page Source code |
| normalizeData.ImageData | Source code |
| normalizeData.PlateData | Source code |
| normalizeData.WellData | Source code |
| normalizeData.default | Source code |
| normalizeMoltenData | Man page Source code |
| plateBoxplot | Man page Source code |
| plateHeatmap | Man page Source code |
| prepareDataforGlm | Man page Source code |
| printPlateSet | Source code |
| processContents | Source code |
| processExperiments | Source code |
| processPathogens | Source code |
| processPlates | Source code |
| processSingleCellDataPlate | Man page Source code |
| processWellCols | Source code |
| processWellNames | Source code |
| processWellRows | Source code |
| processWellTypes | Source code |
| readMatFeatureHelper | Source code |
| readRDSMC | Man page Source code |
| rebuildAllMatDataCaches | Man page Source code |
| rebuildCache | Man page Source code |
| rebuildCache.MatData | Source code |
| rebuildCache.default | Source code |
| reloadSingleCellFeatures | Man page Source code |
| saveRDSMC | Man page Source code |
| saveToCache | Man page Source code |
| saveToCache.MatData | Source code |
| saveToCache.PlateAggregate | Source code |
| saveToCache.WellData | Source code |
| saveToCache.default | Source code |
| size | Man page Source code |
| updateDatabaseFeatures | Man page Source code |
| updateDatabasePlate | Man page Source code |
| updateDatabaseWells | Man page Source code |
| wellDatabaseCoverage | Man page Source code |
