extract.equivalent_shifts: Extract the shifts values for one trait.

In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM

Extract the shifts values for one trait.

Description

extract.equivalent_shifts takes an object of class equivalent_shifts, result of function equivalent_shifts, and returns the shifts of root values for a given trait.

Usage

## S3 method for class 'equivalent_shifts'
extract(x, trait = 1, what = c("shifts_values", "root_values"), ...)

Arguments

x	an object of class equivalent_shifts, result of function equivalent_shifts
trait	the number of the trait to be extracted. Default to 1.
what	one of "shifts_values" or "root_values".
...	unused.

Value

A matrix with the values of the shifts (what = "shifts_values") or the root (what = "root_values") for the trait for each equivalent configuration. Each column is one configuration.

See Also

equivalent_shifts, plot.equivalent_shifts, equivalent_shifts_edges

pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.