init.parsimonyCost: Initialization for parsimonyCost.
In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
View source: R/parsimonyNumber.R
init.parsimonyCost R Documentation
Initialization for parsimonyCost.
Description
init.parsimonyCost initialize a (ntaxa + Nnode) x (nclus) matrix with
NAs everywhere, except for the tips.
Usage
init.parsimonyCost(phy, clusters)
Arguments
phy
a phylogenetic tree, class phylo.
clusters
the vector of the clusters of the tips.
Details
At a tip i in state k, the line-vector is initialized as follow :
(1 - Ind(k=p)_{1<=p<=nclus})*Inf (where Inf * 0 = 0)
Value
A (ntaxa + Nnode)x(nclus) matrix, with ntaxa first lines initialized as
described.
pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.
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View source: R/parsimonyNumber.R
| init.parsimonyCost | R Documentation |
Initialization for parsimonyCost.
Description
init.parsimonyCost initialize a (ntaxa + Nnode) x (nclus) matrix with
NAs everywhere, except for the tips.
Usage
init.parsimonyCost(phy, clusters)
Arguments
phy |
a phylogenetic tree, class |
clusters |
the vector of the clusters of the tips. |
Details
At a tip i in state k, the line-vector is initialized as follow : (1 - Ind(k=p)_{1<=p<=nclus})*Inf (where Inf * 0 = 0)
Value
A (ntaxa + Nnode)x(nclus) matrix, with ntaxa first lines initialized as described.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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