init.parsimonyNumber: Initialization for parsimonyNumber.
In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM
View source: R/parsimonyNumber.R
init.parsimonyNumber R Documentation
Initialization for parsimonyNumber.
Description
init.parsimonyNumber initialize a (ntaxa + Nnode)x(nclus) matrix with
NAs everywhere, except for the tips.
Usage
init.parsimonyNumber(phy, clusters)
Arguments
phy
phylogenetic tree.
clusters
the vector of the clusters of the tips.
Details
At a tip i in state k, the line-vector is initialized as follow : Ind(k=p)_{1<=p<=nclus}
Value
A (ntaxa + Nnode)x(nclus) matrix, with ntaxa first lines initialized
as described.
pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.
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View source: R/parsimonyNumber.R
| init.parsimonyNumber | R Documentation |
Initialization for parsimonyNumber.
Description
init.parsimonyNumber initialize a (ntaxa + Nnode)x(nclus) matrix with
NAs everywhere, except for the tips.
Usage
init.parsimonyNumber(phy, clusters)
Arguments
phy |
phylogenetic tree. |
clusters |
the vector of the clusters of the tips. |
Details
At a tip i in state k, the line-vector is initialized as follow : Ind(k=p)_{1<=p<=nclus}
Value
A (ntaxa + Nnode)x(nclus) matrix, with ntaxa first lines initialized as described.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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