plot_criterion: Plot Model Selection Criterion

In pbastide/PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM

Plot Model Selection Criterion

Description

This function takes an object of class PhyloEM, result of function PhyloEM, and plots a model selection criterion.

Usage

plot_criterion(
  res,
  method.selection = NULL,
  add = FALSE,
  select.col = "red",
  ...
)

Arguments

res	an object of class PhyloEM, result of function PhyloEM.
method.selection	select the parameters to plot. One of "LINselect", "DDSE", "Djump" or "likelihood" (for un-penalized likelihood). Default to "LINselect". See params_process.PhyloEM.
add	boolean: should the points be added to a current plot (default to FALSE).
select.col	the color of the point selected by the criterion. Default to "red".
...	further argument to be passed to base plot.

See Also

params_process.PhyloEM, plot.PhyloEM, get_criterion

pbastide/PhylogeneticEM documentation built on Feb. 12, 2024, 1:27 a.m.