makeSubClassifier: Make Classifier tailored for subclassifier

In pcahan1/cancerCellNet: CellNet, for cancer

Make Classifier tailored for subclassifier

Description

Create a random forest classifier with the transformed training data from query_transform.

Usage

makeSubClassifier(
  expTrain,
  genes,
  groups,
  nRand,
  ntrees = 2000,
  classMatrix_rand,
  pairTransformedMatrix,
  stratify = FALSE,
  sampsize = 40
)

Arguments

expTrain	transformed training data from query_transform
genes	vector of gene pairs from ptGetTop used as predictors
groups	named vector of cells to cancer categories
nRand	number of randomized profiles to make
ntrees	number of trees to build
classMatrix_rand	the broad classification for the random category
pairTransformedMatrix	the pairtransformed matrix of the samples
stratify	TRUE for stratified sampling
sampsize	the stratified sample size for each category

Value

Random Forest Classifier object for sub-classifier

pcahan1/cancerCellNet documentation built on July 16, 2022, 12:12 a.m.