sc_filterGenes: Find Genes that Pass Criteria

In pcahan1/cancerCellNet: CellNet, for cancer

Find Genes that Pass Criteria

Description

Based on idea that reliably detected genes will either be detected in many cells, or highly expressed in a small number of cells or both

Usage

sc_filterGenes(geneStats, alpha1 = 0.1, alpha2 = 0.01, mu = 2)

Arguments

geneStats	a matrix containing stats of genes generated from running sc_statTab
alpha1	a number representing proportion of cells in which a gene must be considered detected (as defined in geneStats)
alpha2	a number representing lower proportion of cells for genes that must have higher expression level
mu	a number represeting threshold for average expression level of genes passing the lower proportion criteria

Value

a vector of gene symbols

pcahan1/cancerCellNet documentation built on July 16, 2022, 12:12 a.m.