utils_convertToGeneSymbols: Gene Symbol Conversion

In pcahan1/cancerCellNet: CellNet, for cancer

Gene Symbol Conversion

Description

The function can convert Ensembl Gene ID, Ensembl Transcript ID or mouse gene symbol into human gene symbol

Usage

utils_convertToGeneSymbols(
  expTab,
  typeENST = FALSE,
  typeENSG = FALSE,
  typeMusGene = FALSE
)

Arguments

expTab	the matrix of experssion data with sample names as column names and gene names as row names
typeENST	TRUE if the gene identifier is in Ensembl Transcript ID
typeENSG	TRUE if the gene identifier is in Ensembl Gene ID
typeMusGene	TRUE if the gene identifier is in mouse gene symbols

Value

a converted expression matrix

pcahan1/cancerCellNet documentation built on July 16, 2022, 12:12 a.m.