Man pages for perllb/deseqAbstraction
A set of functions to make DESeq pipes more smooth
| closeGenes | closeGenes : Get close features (genes ) |
| deseqAbs | Class a simple interface to deseq data |
| deseqTE | Class a simple interface to deseq with transposons - inherits... |
| getAverage | Get average read numbers within each condition |
| getGenes | getGenes: Get data for your genes of interest! |
| getSign | getSign genes as table with test data |
| getSignName | getSign IDs of genes that are sign. up or down |
| getSubID | getSubID - easy parsing |
| getVariableGenes | getVariableGenes - get genes with high variation |
| GO_geneFC | GOanalysis in R - GO terms |
| GO_pathview | GOanalysis in R - pathways |
| GO_topGO_geneSet | GOanalysis in R - topGO enrichment test terms |
| GO_topGO_rank | GOanalysis in R - topGO enrichment test terms RANK based |
| heatGenes | HeatGenes: Heatmap of your genes of interest! |
| maPlot | maPlot - my awesome function #2 |
| meanBar | meanBar: Barplot of your genes of interest! |
| meanBarGeneric | meanBarGeneric: Barplot of your genes of interest! |
| meanPlot | meanPlot compare gene expression |
| mostSignificantHeat | Plot most significant genes: heatmap |
| mostVariableHeat | mostVariableHeat - heatmap of variable genes |
| PCAplotter | PCAplotter my awesome function #1 |
| sampleToSample | sampleToSample my awesome function #2 |
| volcanoPlot | volcano plot |
