volcanoPlot: volcano plot
In perllb/deseqAbstraction: A set of functions to make DESeq pipes more smooth
volcanoPlot R Documentation
volcano plot
Description
Generates volcano plot and marks significant genes. Scales the y axis if promted
Usage
volcanoPlot(test, max = NULL, p = 0.05,
title = "transcriptome changes", id = F)
Arguments
test:
output object from results() of DESeq2
p:
cutoff of significance (p-adj)
title:
string describing plot
id:
If TRUE, you can identify points and label their names. FALSE by default
Examples
test <- results(dds,contrast = c("condition","genex-KO","WT"))
volcanoPlot(test = test, max=9,p=.001,title="transcriptome changes upon KO")
perllb/deseqAbstraction documentation built on Oct. 31, 2023, 2:13 a.m.
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| volcanoPlot | R Documentation |
volcano plot
Description
Generates volcano plot and marks significant genes. Scales the y axis if promted
Usage
volcanoPlot(test, max = NULL, p = 0.05,
title = "transcriptome changes", id = F)
Arguments
test: |
output object from results() of DESeq2 |
p: |
cutoff of significance (p-adj) |
title: |
string describing plot |
id: |
If TRUE, you can identify points and label their names. FALSE by default |
Examples
test <- results(dds,contrast = c("condition","genex-KO","WT"))
volcanoPlot(test = test, max=9,p=.001,title="transcriptome changes upon KO")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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