maPlot: maPlot - my awesome function #2

In perllb/deseqAbstraction: A set of functions to make DESeq pipes more smooth

maPlot - my awesome function #2

Description

Plots scatter plot with log2FC on log2(baseMean), and marks significant genes

Usage

maPlot(test, c1 = "cond1", c2 = "cond2", p = 0.05, l = 0, id = F)

Arguments

test:	output object from results() of DESeq2
c1:	string describing condition 1 in results deseq test
c2:	string describing condition 2 in results deseq test
id:	If TRUE, you can identify points and label their names. FALSE by default

Examples

test <- results(dds,contrast = c("condition","gene-KO","WT"))
maPlot(test = test, c1 = "KO", c2 = "WT" )

perllb/deseqAbstraction documentation built on Oct. 31, 2023, 2:13 a.m.