GO_geneFC: GOanalysis in R - GO terms
In perllb/deseqAbstraction: A set of functions to make DESeq pipes more smooth
GO_geneFC R Documentation
GOanalysis in R - GO terms
Description
Do GO term enrichement and analysis for a list of genes
Usage
GO_geneFC(dabs = NULL, species = "hsa", BP = T, MF = F, CC = F,
sameDir = T)
Arguments
dabs:
deseq object
species:
only human (hsa) annotation currently supported, mm10 coming soon..
BP:
test for biological process terms
MF:
test for molecular function terms
CC:
test for cellular compartment terms
sameDir:
test one-directional, terms enriched with genes changed in only same direction
Examples
GO_geneFC(species = "hsa",BP=T,MF=F,CC=F,sameDir=T)
perllb/deseqAbstraction documentation built on Oct. 31, 2023, 2:13 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| GO_geneFC | R Documentation |
GOanalysis in R - GO terms
Description
Do GO term enrichement and analysis for a list of genes
Usage
GO_geneFC(dabs = NULL, species = "hsa", BP = T, MF = F, CC = F,
sameDir = T)
Arguments
dabs: |
deseq object |
species: |
only human (hsa) annotation currently supported, mm10 coming soon.. |
BP: |
test for biological process terms |
MF: |
test for molecular function terms |
CC: |
test for cellular compartment terms |
sameDir: |
test one-directional, terms enriched with genes changed in only same direction |
Examples
GO_geneFC(species = "hsa",BP=T,MF=F,CC=F,sameDir=T)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.