getVariableGenes: getVariableGenes - get genes with high variation
In perllb/deseqAbstraction: A set of functions to make DESeq pipes more smooth
View source: R/getVariableGenes.R
getVariableGenes R Documentation
getVariableGenes - get genes with high variation
Description
returns the most variable genes in data
Usage
getVariableGenes(data, ntop = 100, sdcut = 0)
Arguments
data:
normalized deseq matrix data (with varianceStablizing, rlog etc - eg. assay(vsd)
ntop:
how many genes to display (the <ntop> most variable genes)
sdcut:
return all genes having higher sd than this cutoff
Examples
vst <- varianceStabilizingTransformation(dds)
getVariableGenes(data = assay(vst),ntop = 100)
perllb/deseqAbstraction documentation built on Oct. 31, 2023, 2:13 a.m.
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View source: R/getVariableGenes.R
| getVariableGenes | R Documentation |
getVariableGenes - get genes with high variation
Description
returns the most variable genes in data
Usage
getVariableGenes(data, ntop = 100, sdcut = 0)
Arguments
data: |
normalized deseq matrix data (with varianceStablizing, rlog etc - eg. assay(vsd) |
ntop: |
how many genes to display (the <ntop> most variable genes) |
sdcut: |
return all genes having higher sd than this cutoff |
Examples
vst <- varianceStabilizingTransformation(dds)
getVariableGenes(data = assay(vst),ntop = 100)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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