getAverage: Get average read numbers within each condition
In perllb/deseqAbstraction: A set of functions to make DESeq pipes more smooth
getAverage R Documentation
Get average read numbers within each condition
Description
Calculates average expression of each group, based on condition of dds object. Returns list with Mean and SD values for each gene in each condition
Usage
getAverage(dds)
Arguments
dds:
dds object. MUST have condition as colData grouping!
Examples
dds <- DESeqDataSetFromMatrix(countData = countData, colData = colData, desing =~ condition)
baseMeans <- getAverage(dds)
means <- baseMeans$Mean
SD <- baseMeans$SD
perllb/deseqAbstraction documentation built on Oct. 31, 2023, 2:13 a.m.
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| getAverage | R Documentation |
Get average read numbers within each condition
Description
Calculates average expression of each group, based on condition of dds object. Returns list with Mean and SD values for each gene in each condition
Usage
getAverage(dds)
Arguments
dds: |
dds object. MUST have condition as colData grouping! |
Examples
dds <- DESeqDataSetFromMatrix(countData = countData, colData = colData, desing =~ condition)
baseMeans <- getAverage(dds)
means <- baseMeans$Mean
SD <- baseMeans$SD
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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