meanPlot: meanPlot compare gene expression

In perllb/deseqAbstraction: A set of functions to make DESeq pipes more smooth

meanPlot compare gene expression

Description

Plots scatter plot with log2(cond1) vs. log2(cond2), and marks significant genes

Usage

meanPlot(exp, test, c1 = "condition 1", c2 = "condition 2", p = 0.05,
  l = 0, id = F)

Arguments

exp:	data.frame with average expression of genes (rows) in conditions (cols). Two columns only! if you experiment has more conditions, then select columns first.
c1:	string describing condition 1 in results deseq test
c2:	string describing condition 2 in results deseq test
id:	If TRUE, you can identify points and label their names. FALSE by default#'

Examples

exp <- getAverage(dds)
maPlot(exp = exp, c1 = "KO", c2 = "CTR" )

perllb/deseqAbstraction documentation built on Oct. 31, 2023, 2:13 a.m.