closeGenes: closeGenes : Get close features (genes )
In perllb/deseqAbstraction: A set of functions to make DESeq pipes more smooth
closeGenes R Documentation
closeGenes : Get close features (genes )
Description
Get genes (or other features) close to some other features (.bed). TSS used.
Usage
closeGenes(a = NULL, b, d = 10000)
Arguments
a:
by default the gencode proteincoding transcripts will be used. Has to be a .bed position of all genes of interest. Must have $Chr, $Start, $End $ID $Strand column names! TSS of the transcrips will be used.
b:
a .bed position of all features of interest. Must have $Chr, $Start, $End $ID $Strand column names! TSS of the features will be used
d:
how many basepairs from features B should a feature A be to be included? Default = 10000bps
Examples
closeGenes <- enesClose(a = gencode.transcripts, b = L1s.up, d = 50000 )
perllb/deseqAbstraction documentation built on Oct. 31, 2023, 2:13 a.m.
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| closeGenes | R Documentation |
closeGenes : Get close features (genes )
Description
Get genes (or other features) close to some other features (.bed). TSS used.
Usage
closeGenes(a = NULL, b, d = 10000)
Arguments
a: |
by default the gencode proteincoding transcripts will be used. Has to be a .bed position of all genes of interest. Must have $Chr, $Start, $End $ID $Strand column names! TSS of the transcrips will be used. |
b: |
a .bed position of all features of interest. Must have $Chr, $Start, $End $ID $Strand column names! TSS of the features will be used |
d: |
how many basepairs from features B should a feature A be to be included? Default = 10000bps |
Examples
closeGenes <- enesClose(a = gencode.transcripts, b = L1s.up, d = 50000 )
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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