getSignName: getSign IDs of genes that are sign. up or down

In perllb/deseqAbstraction: A set of functions to make DESeq pipes more smooth

getSign IDs of genes that are sign. up or down

Description

Get the significantly changed genes, returning IDs of up and down-regulated genes separately in a list.

Usage

getSignName(x, p, l = 0)

Arguments

x:	object of results(dds)
p:	p-adj cutoff to use
l:	log2(fc) cutoff to use

Examples

test <- results(dds,contrast = c("condition","genex-KO","WT"))
sign <- getSign(x = test, p = 0.01, l = 0.5)
up <- sign$up
down <- sign$down

perllb/deseqAbstraction documentation built on Oct. 31, 2023, 2:13 a.m.