meanBar: meanBar: Barplot of your genes of interest!
In perllb/deseqAbstraction: A set of functions to make DESeq pipes more smooth

meanBar

R Documentation

meanBar: Barplot of your genes of interest!

Description

barplot of gene expression

Usage

meanBar(deseqAbs, genes, cond = NULL, FPKM = FALSE, points = FALSE)

Arguments

`deseqAbs:`	deseqAbs object with FPKMMean and test data
`genes:`	a vector of gene IDs to be extracted from rownames of data
`cond:`	a vector of conditions to plot
`FPKM:`	Set to TRUE if FPKM should be plotted instead of baseMean
`points:`	Set to TRUE if points should be added
`deseqAbs:`	deseqAbs object with FPKMMean and test data
`genes:`	a vector of gene IDs to be extracted from rownames of data
`cond:`	a vector of conditions to plot
`FPKM:`	Set to TRUE if FPKM should be plotted instead of baseMean
`points:`	Set to TRUE if points should be added

Examples

genes <- c("DNMT1","TRIM28","PAX6","DCX","SOX2","AGO2")
meanBar(dnmt,genes)
genes <- c("DNMT1","TRIM28","PAX6","DCX","SOX2","AGO2")
meanBar(dnmt,genes)

perllb/deseqAbstraction documentation built on Oct. 31, 2023, 2:13 a.m.