compare.graphs: Graph Comparison

In rlebron-bioinfo/gnlearn: Genetic Network Learning

Description

This function allows you to compare two graphs.

Usage

compare.graphs(
  learned,
  true,
  learned.replicates = NULL,
  skeleton = FALSE,
  arcs = FALSE,
  plot = TRUE,
  vertical.plot = TRUE,
  split.plot = TRUE
)

Arguments

learned	Learned graph or graph 1 (obj$average).
true	Ground truth graph or graph 2 (reference).
learned.replicates	List of learned replicates (obj$replicates) (optional). If provided, PR AUC will be calculated.
skeleton	Whether to compare graph skeletons instead of the graphs themself. Default: FALSE
arcs	Whether or not to list the arcs. Default: FALSE.
plot	Whether or not to plot the differences between the two graphs. Default: TRUE
vertical.plot	Whether to draw the comparison plots horizontally. Otherwise, they will be drawn horizontally. Default: TRUE
split.plot	Whether to split comparison plots. Otherwise, they will be drawn together. Default: TRUE

Examples

comparison <- compare.graphs(obj1, obj2, plot=TRUE)
comparison <- compare.graphs(obj1, obj2, plot=FALSE)

rlebron-bioinfo/gnlearn documentation built on July 25, 2020, 12:38 p.m.