StackedVlnPlot: Stacked Violin plot

In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data

Stacked Violin plot

Description

Stacked Violin plot

Usage

StackedVlnPlot(
  object,
  features,
  idents = NULL,
  split.by = NULL,
  color.use = NULL,
  colors.ggplot = FALSE,
  show.median = FALSE,
  median.size = 1,
  angle.x = 90,
  vjust.x = NULL,
  hjust.x = NULL,
  show.text.y = TRUE,
  line.size = NULL,
  pt.size = 0,
  plot.margin = margin(0, 0, 0, 0, "cm"),
  ...
)

Arguments

object	seurat object
features	Features to plot (gene expression, metrics)
idents	Which classes to include in the plot (default is all)
split.by	Name of a metadata column to split plot by;
color.use	defining the color for each cell group
colors.ggplot	whether use ggplot color scheme; default: colors.ggplot = FALSE
show.median	whether show the median value
median.size	the shape size of the median
angle.x	angle for x-axis text rotation
vjust.x	adjust x axis text
hjust.x	adjust x axis text
show.text.y	whther show y-axis text
line.size	line width in the violin plot
pt.size	size of the dots
plot.margin	adjust the white space between each plot
...	Extra parameters passed to VlnPlot from Seurat package

Value

ggplot2 object

sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.