modify_vlnplot: modified vlnplot

In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data

modified vlnplot

Description

modified vlnplot

Usage

modify_vlnplot(
  object,
  features,
  idents = NULL,
  split.by = NULL,
  cols = NULL,
  show.median = FALSE,
  median.size = 1,
  show.text.y = TRUE,
  line.size = NULL,
  pt.size = 0,
  plot.margin = margin(0, 0, 0, 0, "cm"),
  ...
)

Arguments

object	Seurat object
features	Features to plot (gene expression, metrics)
idents	Which classes to include in the plot (default is all)
split.by	Name of a metadata column to split plot by;
cols	defining the color for each cell group
show.median	whether show the median value
median.size	the shape size of the median
show.text.y	whther show y-axis text
line.size	line width in the violin plot
pt.size	size of the dots
plot.margin	adjust the white space between each plot
...	pass any arguments to VlnPlot in Seurat

sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.