netMappingDEG: Mapping the differential expressed genes (DEG) information...
In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data
netMappingDEG R Documentation
Mapping the differential expressed genes (DEG) information onto the inferred cell-cell communications
Description
This function returns a data frame consisting of all the inferred cell-cell communications with mapped DEG information
Usage
netMappingDEG(object, features.name, thresh = 0.05)
Arguments
object
CellChat object
features.name
a char name used for extracting the DEG in 'object@var.features[[features.name]]'
thresh
threshold of the p-value for determining significant interaction
Value
a data frame of the inferred cell-cell communications, consisting of source, target, interaction_name, pathway_name, prob and other CellChatDB information as well as DEG information
sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.
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| netMappingDEG | R Documentation |
Mapping the differential expressed genes (DEG) information onto the inferred cell-cell communications
Description
This function returns a data frame consisting of all the inferred cell-cell communications with mapped DEG information
Usage
netMappingDEG(object, features.name, thresh = 0.05)
Arguments
object |
CellChat object |
features.name |
a char name used for extracting the DEG in 'object@var.features[[features.name]]' |
thresh |
threshold of the p-value for determining significant interaction |
Value
a data frame of the inferred cell-cell communications, consisting of source, target, interaction_name, pathway_name, prob and other CellChatDB information as well as DEG information
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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