netVisual_barplot: Visualization of (differential) number of interactions

In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data

Visualization of (differential) number of interactions

Description

Visualization of (differential) number of interactions

Usage

netVisual_barplot(
  object,
  comparison = c(1, 2),
  measure = c("count", "weight"),
  sources.use = NULL,
  targets.use = NULL,
  invert.source = FALSE,
  invert.target = FALSE,
  signaling = NULL,
  slot.name = c("netP", "net"),
  color.use = NULL,
  title.name = NULL,
  x.lab.rot = FALSE,
  ...
)

Arguments

object	A merged CellChat object or a single CellChat object
comparison	a numerical vector giving the datasets for comparison in object.list; e.g., comparison = c(1,2)
measure	"count" or "weight". "count": comparing the number of interactions; "weight": comparing the total interaction weights (strength)
sources.use	a vector giving the index or the name of source cell groups
targets.use	a vector giving the index or the name of target cell groups.
invert.source, invert.target	retain the complementary set
signaling	a character vector giving the name of signaling networks in a single CellChat object
slot.name	the slot name of object. Set is to be "netP" if input signaling is a pathway name; Set is to be "net" if input signaling is a ligand-receptor pair
color.use	the character vector defining the color of each cell group
title.name	the name of the title
x.lab.rot	do rotation for the x-ticklabels
...	Parameters passing to 'barplot_internal'

Value

an object of ggplot

sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.