netVisual_embeddingZoomIn: Zoom into the 2D visualization of the learned manifold...

In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data

Zoom into the 2D visualization of the learned manifold learning of the signaling networks

Description

Zoom into the 2D visualization of the learned manifold learning of the signaling networks

Usage

netVisual_embeddingZoomIn(
  object,
  slot.name = "netP",
  type = c("functional", "structural"),
  color.use = NULL,
  pathway.remove = NULL,
  nCol = 1,
  dot.size = c(2, 6),
  label.size = 2.8,
  dot.alpha = 0.5,
  xlabel = NULL,
  ylabel = NULL,
  do.label = T,
  show.legend = F,
  show.axes = T
)

Arguments

object	CellChat object
slot.name	the slot name of object that is used to compute centrality measures of signaling networks
type	"functional","structural"
color.use	defining the color for each cell group
pathway.remove	a character vector defining the signaling to remove
nCol	the number of columns of the plot
dot.size	a range defining the size of the symbol
label.size	font size of the text
dot.alpha	transparency
xlabel	label of x-axis
ylabel	label of y-axis
do.label	label the each point
show.legend	whether show the legend
show.axes	whether show the axes

sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.