randomWalkBySolve: project data on graph by solving the linear equation (I -...
In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data
randomWalkBySolve R Documentation
project data on graph by solving the linear equation (I - alpha*A) * E_sm = E * (1-alpha)
Description
project data on graph by solving the linear equation (I - alpha*A) * E_sm = E * (1-alpha)
Usage
randomWalkBySolve(E, A, alpha, normalizeAjdMatrix = c("rows", "columns"))
Arguments
E
initial data matrix [NxM]
A
adjacency matrix of graph to network project on will be column-normalized.
alpha
projecting coefficient (1 - restart probability of random walk)
Value
network-projected gene expression
sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.
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| randomWalkBySolve | R Documentation |
project data on graph by solving the linear equation (I - alpha*A) * E_sm = E * (1-alpha)
Description
project data on graph by solving the linear equation (I - alpha*A) * E_sm = E * (1-alpha)
Usage
randomWalkBySolve(E, A, alpha, normalizeAjdMatrix = c("rows", "columns"))
Arguments
E |
initial data matrix [NxM] |
A |
adjacency matrix of graph to network project on will be column-normalized. |
alpha |
projecting coefficient (1 - restart probability of random walk) |
Value
network-projected gene expression
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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