searchPair: Subset the ligand-receptor interactions for given specific...

In sqjin/CellChat: Inference and analysis of cell-cell communication from single-cell and spatial transcriptomics data

Subset the ligand-receptor interactions for given specific signals in CellChatDB

Description

Subset the ligand-receptor interactions for given specific signals in CellChatDB

Usage

searchPair(
  signaling = c(),
  pairLR.use,
  key = c("pathway_name", "ligand"),
  matching.exact = FALSE,
  pair.only = TRUE
)

Arguments

signaling	a character vector
pairLR.use	a dataframe containing ligand-receptor interactions
key	the keyword to match
matching.exact	whether perform exact matching
pair.only	whether only return ligand-receptor pairs without cofactors

sqjin/CellChat documentation built on Nov. 10, 2023, 4:29 a.m.