SRA_GEO_Category_Conversion: SRA - GEO Category Conversion Table
In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data
Description
Usage
Format
Details
Description
A manually curated set of conversions between SRA library_strategy
and GEO (study) type.
These categories can be used for convenience of searching for terms
using SpiderSeqR functions.
Usage
1
Format
An object of class data.frame with 41 rows and 3 columns.
Details
The categories were created with the following principles in mind:
Only the most common library_strategy and type elements are used
Corresponding library_strategy and type elements are matched
whenever possible (but note that some have no equivalents)
Microarray and Next Generation Sequencing methods are assigned
to separate categories, ending with MA and NGS respectively
Methods investigating similar molecular aspect are grouped
together (e.g. different methods for investigating methylation)
ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.
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Description Usage Format Details
Description
A manually curated set of conversions between SRA library_strategy and GEO (study) type. These categories can be used for convenience of searching for terms using SpiderSeqR functions.
Usage
1 |
Format
An object of class data.frame with 41 rows and 3 columns.
Details
The categories were created with the following principles in mind:
Only the most common library_strategy and type elements are used
Corresponding library_strategy and type elements are matched whenever possible (but note that some have no equivalents)
Microarray and Next Generation Sequencing methods are assigned to separate categories, ending with MA and NGS respectively
Methods investigating similar molecular aspect are grouped together (e.g. different methods for investigating methylation)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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