SpiderSeqR-package: SpiderSeqR: a tool for integration of SRA and GEO metadata

In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data

Description

SpiderSeqR integrates two different sources of sequencing metadata and automates the search and retrieval of the information.

SpiderSeqR functions

• startSpiderSeqR - always run it before using SpiderSeqR

• searchForTerm - search for experiments of interest

• convertAccession - convert between accession types

• searchForAccession - search for specific experiments (output similar to that of searchForTerm)

• rerunSpiderSeqR - run the queries again

• getDatabaseInformation - get basic information on databases (interactive function)

Author(s)

Maintainer: A. Sozanska [e-mail]

Authors:

• C. Fletcher

• S. Samarajiwa [e-mail]

ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.