getColumnDescriptions: Get Descriptions of Columns within Databases
In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data
View source: R/getDatabaseInformation.R
Description
Get Descriptions of Columns within Databases
Usage
1
Value
Data frame with column descriptions
This is a function for convenience of accessing column description tables
for databases from SRAdb and GEOmetadb packages.
Currently GEO provides much better documented descriptions,
whereas SRA column descriptions are only partially complete.
Please note that SpiderSeqR only utilises information
from gsm and gse tables of GEO and sra table for GEO
(which includes collated information from most of the listed tables,
i.e. run, experiment, sample, study, submission).
Currently a duplicate of functionality from getDatabaseInformation()
ss-lab-cancerunit/SpiderSeqR documentation built on Nov. 2, 2020, 12:18 a.m.
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View source: R/getDatabaseInformation.R
Description
Get Descriptions of Columns within Databases
Usage
1 |
Value
Data frame with column descriptions
This is a function for convenience of accessing column description tables for databases from SRAdb and GEOmetadb packages. Currently GEO provides much better documented descriptions, whereas SRA column descriptions are only partially complete. Please note that SpiderSeqR only utilises information from gsm and gse tables of GEO and sra table for GEO (which includes collated information from most of the listed tables, i.e. run, experiment, sample, study, submission).
Currently a duplicate of functionality from getDatabaseInformation()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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