listColumnSets: Sets of column names for use in display or filtering
In ss-lab-cancerunit/SpiderSeqR: A Tool for Integration of Big Bio Data

Description Usage Value Available sets Applications Examples

List of sets of column names for use when subsetting results data frame.

To access a list of all available columns, please see listValidColumns().

1	listColumnSets()

List of character vectors with column names

Accession - accession ids only (SRA and GEO)
Overview - a subjective selection of most important columns (from SRA and GEO) for getting an overview of the samples
Overview2 - columns from Overview with added columns of extracted information from SRA_sample_attribute and GSM_characteristics_ch1 columns

The sets can be used for any purpose, though they have been created with display and filtering applications in mind. Here are recommended uses:

Display: Accession, Overview, Overview2
Filtering: ===*=== (in progress)

listColumnSets() # List all
listColumnSets()$Overview # Access the 'Overview' set of column names
listColumnSets()$Accession # Access the 'Accession' set of column names
names(listColumnSets()) # Get names of the available sets