Files in stevexniu/scMatchmaker
Single Cell Matchmaker
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/RcppExports.R
R/data.R
R/matchmake.R
R/matchmaker-class.R
R/models.R
R/plot.R
R/processing.R
R/utils.R
R/zzz.R
README.md
_pkgdown.yml
appveyor.yml
codecov.yml
data/ccellphonedb.rda
data/decidua.annotation.rda
data/decidua.rda
docs/404.html
docs/LICENSE-text.html
docs/articles/example.html
docs/articles/example_files/figure-html/comparison-1.png
docs/articles/example_files/figure-html/heatmap-1.png
docs/articles/example_files/figure-html/histogram.base-1.png
docs/articles/example_files/figure-html/histogram.emd-1.png
docs/articles/example_files/figure-html/network.cell-1.png
docs/articles/example_files/figure-html/network.gene-1.png
docs/articles/example_files/figure-html/scatterplot-1.png
docs/articles/example_files/figure-html/spotplot-1.png
docs/articles/index.html
docs/articles/vignette_files/figure-html/heatmap-1.png
docs/articles/vignette_files/figure-html/histogram.base-1.png
docs/articles/vignette_files/figure-html/histogram.emd-1.png
docs/articles/vignette_files/figure-html/network.cell-1.png
docs/articles/vignette_files/figure-html/network.gene-1.png
docs/articles/vignette_files/figure-html/scatterplot-1.png
docs/articles/vignette_files/figure-html/spotplot-1.png
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/code-color-scheme-dark.css
docs/code-color-scheme-light.css
docs/darkswitch.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/preferably.css
docs/reference/Complexing.html
docs/reference/Converting.html
docs/reference/Differing.html
docs/reference/LoadCellPhoneDB.html
docs/reference/Matchmaker-class.html
docs/reference/Matchmaking.html
docs/reference/Merging.html
docs/reference/Normalization.html
docs/reference/PlotHeatmap.html
docs/reference/PlotHistogram.html
docs/reference/PlotNetwork.html
docs/reference/PlotScatter.html
docs/reference/PlotSpot.html
docs/reference/Resetting.html
docs/reference/Rplot001.png
docs/reference/Saving.html
docs/reference/Scaling.html
docs/reference/Screening.html
docs/reference/Selecting.html
docs/reference/Sketching.html
docs/reference/Subsetting.html
docs/reference/aggregateName.html
docs/reference/asSparse.html
docs/reference/calcDensity.html
docs/reference/calcEMD.html
docs/reference/calcStrength.html
docs/reference/calcStrength.single.html
docs/reference/cellphonedb.html
docs/reference/checkIdents.html
docs/reference/convertData.html
docs/reference/decidua.annotation.html
docs/reference/decidua.html
docs/reference/filterInteractions.html
docs/reference/filterMatrix.html
docs/reference/findInteractions.html
docs/reference/findInteractions.single.html
docs/reference/geomSketch.html
docs/reference/heatmapPlot.html
docs/reference/histogramPlot.html
docs/reference/index.html
docs/reference/logCommand.html
docs/reference/logTPM.html
docs/reference/matchNames.html
docs/reference/mergeLists.html
docs/reference/networkPlot.html
docs/reference/orderMatrix.html
docs/reference/randomIdents.html
docs/reference/rowScale.html
docs/reference/scMatchmaker-package.html
docs/reference/scMatchmaker.html
docs/reference/scatterPlot.html
docs/reference/spotPlot.html
docs/reference/statsCells.html
docs/reference/zeroOne.html
docs/sitemap.xml
inst/WORDLIST
man/Complexing.Rd
man/Converting.Rd
man/Differing.Rd
man/LoadCellPhoneDB.Rd
man/Matchmaker-class.Rd
man/Matchmaking.Rd
man/Merging.Rd
man/Normalization.Rd
man/PlotHeatmap.Rd
man/PlotHistogram.Rd
man/PlotNetwork.Rd
man/PlotScatter.Rd
man/PlotSpot.Rd
man/Resetting.Rd
man/Saving.Rd
man/Scaling.Rd
man/Screening.Rd
man/Selecting.Rd
man/Sketching.Rd
man/Subsetting.Rd
man/aggregateName.Rd
man/asSparse.Rd
man/calcDensity.Rd
man/calcEMD.Rd
man/calcStrength.Rd
man/calcStrength.single.Rd
man/cellphonedb.Rd
man/checkIdents.Rd
man/convertData.Rd
man/decidua.Rd
man/decidua.annotation.Rd
man/filterInteractions.Rd
man/filterMatrix.Rd
man/findInteractions.Rd
man/findInteractions.single.Rd
man/geomSketch.Rd
man/heatmapPlot.Rd
man/histogramPlot.Rd
man/logCommand.Rd
man/logTPM.Rd
man/matchNames.Rd
man/mergeLists.Rd
man/networkPlot.Rd
man/orderMatrix.Rd
man/randomIdents.Rd
man/rowScale.Rd
man/scMatchmaker-package.Rd
man/scatterPlot.Rd
man/spotPlot.Rd
man/statsCells.Rd
man/zeroOne.Rd
src/.gitignore
src/RcppExports.cpp
src/normalize.cpp
tests/figs/deps.txt
tests/figs/test-plot/plotheatmap-by-gene.svg
tests/figs/test-plot/plotheatmap-strength.svg
tests/figs/test-plot/plothistogram.svg
tests/figs/test-plot/plotnetwork-by-gene.svg
tests/figs/test-plot/plotscatter.svg
tests/figs/test-plot/plotspot-by-gene.svg
tests/figs/test-plot/plotspot-strength-barplot.svg
tests/figs/test-plot/plotspot-strength.svg
tests/testdata/cellphonedb/complex_input.txt
tests/testdata/cellphonedb/gene_input.txt
tests/testdata/cellphonedb/interaction_input.txt
tests/testdata/cellphonedb/protein_input.txt
tests/testdata/decidua.small.rda
tests/testthat.R
tests/testthat/test_class.R
tests/testthat/test_emd.R
tests/testthat/test_object.R
tests/testthat/test_plot.R
tests/testthat/test_preprocess.R
tests/testthat/test_utils.R
vignettes/.gitignore
vignettes/example.Rmd
