TargetSeq_filter_cells_and_genes: TargetSeq processing for filtering out cells and genes

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

TargetSeq processing for filtering out cells and genes

Description

TargetSeq processing for filtering out cells and genes

Usage

TargetSeq_filter_cells_and_genes(
  object,
  min_Reads = 2000,
  min_detected_genes = 500,
  min_percent_mito = 0,
  max_percent_mito = 10,
  min_percent_ERCC = 0,
  max_percent_ERCC = 50,
  genes_with_expressing_cells = 10
)

Arguments

object	TargetSeq object.
min_Reads	The minimum number of reads cutoff.
min_detected_genes	The minimum number of genes detected per cell.
min_percent_mito	The minimum percent of reads from mitocondrial genes.
max_percent_mito	The maximum percent of reads from mitocondrial genes.
min_percent_ERCC	The minimum percent of reads from ERCC.
max_percent_ERCC	The maximum percent of reads from ERCC.
genes_with_expressing_cells	The cutoff for genes expressing in expressing cells.

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.