plot_ShortestPath_on_3D_knn_graph: Plot the shortest-path on the 3D KNN-Graph

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Plot the shortest-path on the 3D KNN-Graph

Description

Plot the shortest-path on the 3D KNN-Graph

Usage

plot_ShortestPath_on_3D_knn_graph(
  object,
  start_cluster = "",
  end_cluster = "",
  cluster.type = c("louvain", "walktrap", "kmeans"),
  path.color = "red",
  vertext.size = 0.4,
  edge.color = "gray45"
)

Arguments

object	The SingCellaR object.
start_cluster	The starting cluster.
end_cluster	The ending cluster.
cluster.type	The clustering method name.
path.color	The path color. Default red
vertext.size	The node size. Default 0.4
edge.color	The edge color. Default gray

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.