plot_diffusionmap_label_by_genes: Plot diffusion map with gene expression

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Plot diffusion map with gene expression

Description

Plot diffusion map with gene expression

Usage

plot_diffusionmap_label_by_genes(
  object,
  gene_list = c(),
  point.size = 0.3,
  point.color1 = "blue",
  point.color2 = "red",
  x_eigenVal = "DC1",
  y_eigenVal = "DC2"
)

Arguments

object	The SingCellaR object.
gene_list	The vector of gene names
point.size	The point size. Default 0.3
point.color1	The first color of gene expression gradient. Default blue
point.color2	The second color of gene expression gradient. Default red
x_eigenVal	The diffusion map dimension on x axis. Default DC1
y_eigenVal	The diffusion map dimension on y axis. Default DC2

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.