plot_forceDirectedGraph_label_by_clusters: Plot force-directed graph with identified clusters

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Plot force-directed graph with identified clusters

Description

Plot force-directed graph with identified clusters

Usage

plot_forceDirectedGraph_label_by_clusters(
  object,
  show_method = c("walktrap", "louvain", "kmeans", "merged_walktrap", "merged_louvain",
    "merged_kmeans"),
  vertex.size = 2,
  mark.clusters = TRUE,
  mark.font.size = 10,
  mark.font.color = "yellow",
  add.cluster.in.cells = FALSE,
  cluster.font.size = 1,
  cluster.font.color = "yellow",
  edge.size = 0.2,
  edge.color = "gray",
  background.color = "white"
)

Arguments

object	The SingCellaR object.
show_method	The clustering method names used to generate clusters.
mark.clusters	is logical. If TRUE, the number of identified clusters will be displayed.
mark.font.size	The font size of the cluster name. Default 10
mark.font.color	The font color of the cluster name. Default yellow
add.cluster.in.cells	is logical. If TRUE, the cluster name will be displayed in each data point.
cluster.font.size	The font size of cluster name in each data point. Default 1
cluster.font.color	The font color of cluster name in each data point. Default yellow
edge.size	The size of the edge. Default 0.2
edge.color	The edge color. Default gray
background.color	The background color. Default white
vertext.size	The node size. Default 2

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.