plot_umap_label_by_a_signature_gene_set: Plot UMAP with the expression of selected gene set

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Plot UMAP with the expression of selected gene set

Description

Plot UMAP with the expression of selected gene set

Usage

plot_umap_label_by_a_signature_gene_set(
  object,
  gene_list = c(),
  gene_set_name = c(),
  isNormalizedByHouseKeeping = F,
  point.size = 1,
  point.color1 = "black",
  point.color2 = "red"
)

Arguments

object	The SingCellaR object.
gene_list	The vector of gene names.
gene_set_name	The name of gene set.
isNormalizedByHouseKeeping	is logical. If TRUE, the gene expression will be normalized by the expression of house keeping genes.
point.size	The point size. Default 0.3
point.color1	The first color of gene expression gradient. Default blue
point.color2	The second color of gene expression gradient. Default red

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.