plot_umap_label_by_multiple_gene_sets: Plot UMAP with the expression of multiple gene sets

View source: R/SingleCellPlots.R

plot_umap_label_by_multiple_gene_setsR Documentation

Plot UMAP with the expression of multiple gene sets

Description

Plot UMAP with the expression of multiple gene sets

Usage

plot_umap_label_by_multiple_gene_sets(
  object,
  gmt.file = c(),
  show_gene_sets = c(),
  custom_color = c(),
  isNormalizedByHouseKeeping = T,
  point.size = 2,
  showLegend = T,
  background.color = "white"
)

Arguments

object

The SingCellaR object.

gmt.file

The GMT file for gene sets.

show_gene_sets

The names of selected gene sets.

custom_color

The custom color names.

isNormalizedByHouseKeeping

is logical. If TRUE, the gene expression will be normalized by the expression of house keeping genes.

point.size

The point size. Default 2

showLegend

is logical. If TRUE, the figure legend will be shown.

background.color

The background color of the plot. Default white


supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.