plot_umap_label_by_multiple_gene_sets: Plot UMAP with the expression of multiple gene sets

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Plot UMAP with the expression of multiple gene sets

Description

Plot UMAP with the expression of multiple gene sets

Usage

plot_umap_label_by_multiple_gene_sets(
  object,
  gmt.file = c(),
  show_gene_sets = c(),
  custom_color = c(),
  isNormalizedByHouseKeeping = T,
  point.size = 2,
  showLegend = T,
  background.color = "white"
)

Arguments

object	The SingCellaR object.
gmt.file	The GMT file for gene sets.
show_gene_sets	The names of selected gene sets.
custom_color	The custom color names.
isNormalizedByHouseKeeping	is logical. If TRUE, the gene expression will be normalized by the expression of house keeping genes.
point.size	The point size. Default 2
showLegend	is logical. If TRUE, the figure legend will be shown.
background.color	The background color of the plot. Default white

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.