plot_violin_for_genes_per_custom_group_of_cells: Plot violin-plot for gene expression per custom group of...

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Plot violin-plot for gene expression per custom group of cells

Description

Plot violin-plot for gene expression per custom group of cells

Usage

plot_violin_for_genes_per_custom_group_of_cells(
  object,
  custom_group_of_cells = list(),
  gene_list = c(),
  take_log2 = T,
  xlab.text.size = 5,
  point.size = 0.2,
  point.alpha = 0.1,
  grid.ncol = 3,
  grid.nrow = 3
)

Arguments

object	The SingCellaR object.
custom_group_of_cells	The list of custome group of cells.
gene_list	The vector of gene names.
take_log2	is logical. If TRUE, log2 expression will be applied.
xlab.text.size	The font size of the label on the x-axis. Default 5
point.size	The size of data point. Default 0.2
point.alpha	The alpha parameter of the data point. Default 0.1
grid.ncol	the column number of the grid of the containing plots to be displayed. Default 3
grid.nrow	the row number of the grid of the containing plots to be displayed. Default 3

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.