plot_violin_for_marker_genes: Plot violin-plot for marker genes

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Plot violin-plot for marker genes

Description

Plot violin-plot for marker genes

Usage

plot_violin_for_marker_genes(
  object,
  cluster.type = c("louvain", "walktrap", "kmeans"),
  gene_list = c(),
  take_log2 = T,
  xlab.text.size = 5,
  point.size = 0.2,
  point.alpha = 0.1
)

Arguments

object	The SingCellaR object.
cluster.type	The clustering method name.
gene_list	The vector of gene names.
take_log2	is logical. If TRUE, the expression shows in the log2 scale.
xlab.text.size	The font size of the label in the x-axis. Default 5
point.size	The point size. Default 0.2
point.alpha	The alpha parameter. Default 0.1

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.