remove_unwanted_genes_from_variable_gene_set: Remove unwanted genes from identified list of variable genes

In supatt-lab/SingCellaR: SingCellaR: an integrative analysis tool for single-cell RNA sequencing (scRNA-seq) data

Remove unwanted genes from identified list of variable genes

Description

Remove unwanted genes from identified list of variable genes

Usage

remove_unwanted_genes_from_variable_gene_set(
  object,
  gmt.file = c(),
  removed_gene_sets = c("Ribosomal_gene", "Mitochondrial_gene")
)

Arguments

object	The SingCellaR object.
gmt.file	The GMT file that containes the signature gene sets.
removed_gene_sets	The vector of gene sets to be removed from the list of variable genes.

supatt-lab/SingCellaR documentation built on Aug. 24, 2023, 5:49 p.m.