Files in tkonopka/ExpCube
Analysis of cell/stimulus/gene expression data
DESCRIPTION
NAMESPACE
R/ExpCube-FC.R
R/ExpCube-help.R
R/ExpCube-leftovers.R
R/ExpCube-load.R
R/ExpCube-makesigs.R
R/ExpCube-plot.R
R/ExpCube-plothelp.R
R/ExpCube-rescale.R
R/ExpCube-segmentation.R
R/ExpCube-sigs.R
README.md
figures/cube-2d.png
figures/cube-3d.2.png
figures/cube-3d.png
figures/cubes.svg
inst/doc/ExpCube-vignette-PlateSeries.html
inst/doc/ExpCube-vignette-PlateSeries.md
inst/doc/figure/unnamed-chunk-18-1.png
inst/extdata/ExpCube.Rcss
inst/extdata/ExpCube.Rcss~
inst/extdata/KiCube.rescaling.factor.discovery.csv
inst/extdata/PlateSeries.longsummary.csv
inst/extdata/PlateSeries.readcounts.tsv
inst/extdata/PlateSeries/HAP1_PoolAB_1.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_10.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_11.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_12.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_13.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_14.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_15.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_16.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_2.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_3.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_4.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_5.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_6.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_7.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_8.exp3p.gene.txt.gz
inst/extdata/PlateSeries/HAP1_PoolAB_9.exp3p.gene.txt.gz
man/E3Axes.Rd
man/E3CalcAcrossGroupIntervalRescaleFactors.Rd
man/E3CalcWithinGroupIntervalRescaleFactors.Rd
man/E3CompareSignatures.Rd
man/E3CompareVectors.Rd
man/E3DEscore.Rd
man/E3DrawMarkerLegend.Rd
man/E3DrawScaleLegend.Rd
man/E3GetDEScores.Rd
man/E3GetExpressedGenes.Rd
man/E3GetFisherP.Rd
man/E3GetGenePosition.Rd
man/E3GetJaccard.Rd
man/E3GetJaccardDistance.Rd
man/E3GetObservedExpectedGroupFC.Rd
man/E3GetOverlap.Rd
man/E3GetRelativeOverlap.Rd
man/E3LoadExp3pGeneData.Rd
man/E3LoadGMT.Rd
man/E3LoadPlateConfig.Rd
man/E3MakeFCSegmentation.Rd
man/E3MakeGLMs.Rd
man/E3MakeGroupCovariates.Rd
man/E3MakeGroupSignatureScores.Rd
man/E3MakeSampleGroups.Rd
man/E3MakeSignatureFromScores.Rd
man/E3MeasureGroupConsistency.Rd
man/E3PlotBasicHeat.Rd
man/E3PlotBeforeAfter.Rd
man/E3PlotBoxes.Rd
man/E3PlotClusteringDiamond.Rd
man/E3PlotContourScatter.Rd
man/E3PlotHist.Rd
man/E3PlotLines.Rd
man/E3PlotScatter.Rd
man/E3PlotScatterBubbles.Rd
man/E3PlotSegmentationOverview.Rd
man/E3PlotSmoothGenomeOverview.Rd
man/E3PlotStimulusLegend.Rd
man/E3PlotVioSet.Rd
man/E3RescaleIntervals.Rd
man/E3SpearmanRhoFromRanks.Rd
man/E3Val2Col.Rd
man/E3ValMat2ColMat.Rd
man/E3Vioplot.Rd
man/E3WriteSignatureGMT.Rd
man/E3dist.euclidean.Rd
man/E3dist.spearman.Rd
vignettes/ExpCube-vignette-PlateSeries.Rmd
