E3GetExpressedGenes: Determine genes that are expressed in a dataset. Expressed...

Description Usage Arguments

Description

Determine genes that are expressed in a dataset. Expressed genes are those that have expression in a range (min.expression, max.expression)

Usage

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E3GetExpressedGenes(dlist, id.col = "Gene", min.expression = 1,
  max.expression = Inf, min.count = 1)

Arguments

dlist

- a list of dataframes, one of which must be $expression. Data frames must have one identifier column and the remaining columns will be treated as samples.

id.col

- character string. Name of column that contain gene identifier

min.expression

- numeric. Minimal expression level

max.expression

- numeric. Maximal expression level

min.count

- integer. Number of samples that must lie in range [min.expression, max.expression]. Use this to require a gene to be expressed in several samples in a cohort.


tkonopka/ExpCube documentation built on May 31, 2019, 3:44 p.m.