Determine genes that are expressed in a dataset. Expressed genes are those that have expression in a range (min.expression, max.expression)
1 2 | E3GetExpressedGenes(dlist, id.col = "Gene", min.expression = 1,
max.expression = Inf, min.count = 1)
|
dlist |
- a list of dataframes, one of which must be $expression. Data frames must have one identifier column and the remaining columns will be treated as samples. |
id.col |
- character string. Name of column that contain gene identifier |
min.expression |
- numeric. Minimal expression level |
max.expression |
- numeric. Maximal expression level |
min.count |
- integer. Number of samples that must lie in range [min.expression, max.expression]. Use this to require a gene to be expressed in several samples in a cohort. |
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