gene expression data

Draws a heatmap representation of a genomic segmentation (using Rcssplot)

E3PlotSegmentationOverview(seglist, chrlens = NULL, categories = list(All =
  names(seglist)), heatcols = c("#00ffff", "#ff00ff"), label.chr = c(),
  seg.rescale = 2, seg.hlab = 0.3, seg.vlab = 1e+06, legend = NULL,
  axes.labels = NULL, Rcss = "default", Rcssclass = "segmentation")

`seglist`	- list of cbs segmentation data frames
`chrlens`	- named vector with lengths of chromosomes (chromosomes will appear in this order)
`categories`	- a list splitting the groups into categories (eg. plates) groups on the vertical axis will be grouped accordingly
`heatcols`	-
`label.chr`	- names of chromosomes to label on horizontal axis
`seg.rescale`	- numeric. Used to modulate color intensity
`seg.hlab`	- numeric. Determines spacing between labels near x axis.
`seg.vlab`	- numeric. Determines spacing between labels near y axis.
`legend`	- numeric. Values to use on the legend box.
`axes.labels`	- character vector of length two. Text to write near y axis to the left and to the right of the heatmap.
`Rcss`	- Rcss object. Used to style the heatmap with Rcssplot.
`Rcssclass`	- character vector. Classes to tune Rcssplot formatting.