Description Usage Arguments Details
The goal is to find genes that are more variable in practice than the uncertainty interval model may suggest.
1 2 | E3CalcWithinGroupIntervalRescaleFactors(sampledata, id.col = "Gene",
bg.samples = NULL, upper.quantile = 0.85, min.factor = 1)
|
sampledata |
- a list with tables $expression, $expression.low, $expression.high |
id.col |
- character strings. Name of column in sampledata that identifies the gene/transcript species |
bg.samples |
- list of sample names. Each vector should represent a group of related samples (replicates). The function will compute variability within each group. |
upper.quantile |
- numeric. The quantile used to equalize the input and output intervals. |
min.factor |
- numeric. Minimum rescaling factor, i.e. when procedure gives a suggestion to rescale by a factor lower than this, the output will in fact be min.factor. |
computes an empirical interval from values of a background sample set computes a representative interval from values of the background sample set computes the ratio of the empirical to representative - this is the output
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