gene expression data

Draw a scatter plot, including line of best fit, correlation measures and labels (using Rcssplot)

E3PlotScatter(xx, yy, items = NULL, outliers = NULL, col = NULL,
  onecol = NULL, items.highlight = c(), xlim = NULL, ylim = NULL,
  xlimwiden = 0.1, xlab = NULL, ylab = NULL, main = "", xerr = NULL,
  yerr = NULL, labelq = c(0.02, 0.98), cex.rescale = NULL,
  show.correlation = TRUE, show.glm = FALSE, show.labels = c(),
  correlation.threshold = 1e-04, add = FALSE, Rcss = "default",
  Rcssclass = c())

`xx`	- numeric vector with names. x coordinates for points.
`yy`	- numeric vector with names. y coordinates for points
`items`	- character vector. ids of data points to display
`outliers`	- character vector. ids of data points drawn as outliers.
`col`	-
`onecol`	-
`items.highlight`	- character vector. Names of items x,y to highlight.
`xlim`	- numeric vector with two elements. range for x axis
`ylim`	- numeric vector with two elements. range for y axis
`xlimwiden`	- numeric. Determines how much wider the actual x range will be relative to xlim. Use this to add some padding around the xlim.
`xlab`	- character string. Text to display below x axis
`ylab`	- character string. Text to display below y axis.
`main`	- character string. Text to display as title, above heatmap.
`xerr`	- numeric vector with names. Values of stderr on the x axis for error bars.
`yerr`	- numeric vector with names. Values of stderr on the y values for error bars.
`labelq`	- numeric vector of length two. Quantiles that determine which items should be highlihted.
`cex.rescale`	- numeric. Rescaling factor for items marked for highlighting.
`show.correlation`	- logical. Toggle display of Spearman correlation info.
`show.glm`	- logical. Toggle display of best fit line.
`show.labels`	- character vector. Names of items to label on the plot.
`correlation.threshold`	- numeric. Correlations with p-value below this threshold will be highlighted in bold.
`Rcss`	- Rcss object. Used to style the heatmap with Rcssplot.
`Rcssclass`	- character vector. Classes to tune Rcssplot formatting.