Load expression data for samples from Exp3p-like data files.
1 2 3 4 | E3LoadExp3pGeneData(samplenames, platenames, path.template,
column.template = "SAMPLE.EPM", column.low.template = "SAMPLE.EPM.low",
column.high.template = "SAMPLE.EPM.high", id.in = "Region.id",
id.out = "Gene", rescale.uncertainty = 1, verbose = TRUE)
|
samplenames |
- character vector with sample codes e.g. KO_None. The sample codes must correspond to parts of the data path. |
platenames |
- character vector with additional codes for each sample, e.g. a plate id. These codes must correspond to parts of the data path. |
path.template |
- character string. This is a generic path that can contain patterns SAMPLE and PLATE. These substrings will be replaced by values from the previous two vectors. |
column.template |
- character string marking the column in the data table containing values to be interpreted as expression values. The pattern SAMPLE will be replaced by values from the samplenames vector. |
column.low.template |
- character string. Similar to column.template, but referring to columns with a low estimate for expression values |
column.high.template |
- character string. Similar to column.template, but referring to columns with a high estimate for expression values |
id.in |
- character string. Name of column in input data files containing the gene or region identifier. |
id.out |
- character string. Name of column in the output data frame containing gene identifier |
rescale.uncertainty |
- numeric. When different from one, the low/high estimates will be modified by this factor. Use this value to read more conservative expression intervals. |
verbose |
- logical. Print out progress messages. |
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